modules/gatk_unifiedgenotyper
SNP and Indel variant caller on a per-locus basis
bamvcfvariant calling
Input
Name (Type)
Description
Pattern
Groovy Map containing file meta-information for the contamination file.
e.g. [ id:'test', single_end:false ]
Tab-separated file containing fraction of contamination in sequencing data (per sample) to aggressively remove
*
Groovy Map containing file meta-information for the dbsnps file.
e.g. [ id:'test', single_end:false ]
Groovy Map containing file meta-information for the VCF comparison file.
e.g. [ id:'test', single_end:false ]