Convert a mappability file to bedgraph format
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
map:file
The mappability file created from the index
*.mappability
meta2:map
Groovy Map containing index information
index:file
The index of the reference FASTA
*.gem
bedgraph
*.bg:file
The resulting bedgraph file
*.bg
sizes
*.sizes:file
The chromosome sizes
*.sizes
versions
versions.yml:file
File containing software versions
versions.yml
GEM2 is a high-performance mapping tool. It also provide a unique tool to evaluate mappability.
