Create a GEM index from a FASTA file
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta
:file
A reference FASTA file to index
*.{fasta,fa,fna}
index
*.gem
The GEM index file
log
*.log
The execution log
versions_gem2
${task.process}
:string
The name of the process
gem2
The name of the tool
20200110
The expression to obtain the version of the tool
versions
GEM2 is a high-performance mapping tool. It also provide a unique tool to evaluate mappability.
