Create a GEM index from a FASTA file
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta{:bash}
:file
A reference FASTA file to index
*.{fasta,fa,fna}
index{:bash}
*.gem{:bash}
The GEM index file
*.gem
log{:bash}
*.log{:bash}
The execution log
*.log
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
GEM2 is a high-performance mapping tool. It also provide a unique tool to evaluate mappability.
