Create a GEM index from a FASTA file
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
fasta:file
A reference FASTA file to index
*.{fasta,fa,fna}
index
*.gem:file
The GEM index file
*.gem
log
*.log:file
The execution log
*.log
versions
versions.yml:file
File containing software versions
versions.yml
GEM2 is a high-performance mapping tool. It also provide a unique tool to evaluate mappability.
