Define the mappability of a reference
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
index
:file
The index created with gem-indexer from the reference FASTA
*.gem
read_length
:integer
The read length to define the mappability of
map
*.mappability
The resulting mappability file
versions_gem2
${task.process}
:string
The name of the process
gem2
The name of the tool
20200110
The expression to obtain the version of the tool
versions
GEM2 is a high-performance mapping tool. It also provide a unique tool to evaluate mappability.
