Define the mappability of a reference
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
index:file
The index created with gem-indexer from the reference FASTA
*.gem
read_length:integer
The read length to define the mappability of
map
*.mappability:file
The resulting mappability file
*.mappability
versions
versions.yml:file
File containing software versions
versions.yml
GEM2 is a high-performance mapping tool. It also provide a unique tool to evaluate mappability.
