Define the mappability of a reference
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
index{:bash}
:file
The index created with gem-indexer from the reference FASTA
*.gem
read_length{:bash}
:integer
The read length to define the mappability of
map{:bash}
*.mappability{:bash}
The resulting mappability file
*.mappability
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
GEM2 is a high-performance mapping tool. It also provide a unique tool to evaluate mappability.
