Create a GEM index from a FASTA file
meta
:map
Groovy Map containing information about the fasta file e.g. [ id:‘test’ ]
fasta
:file
A reference FASTA file to index
*.{fasta,fa,fna}
index
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
*.gem
The GEM index file
info
*.info
The execution log
versions_gem3
${task.process}
:string
The name of the process
gem3-indexer
The name of the tool
gem-indexer --version 2>&1 | sed 's/v//'
:eval
The expression to obtain the version of the tool
versions
The GEM indexer (v3).
