Description

Create a GEM index from a FASTA file

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing information about the fasta file
e.g. [ id:‘test’ ]

fasta (file)

A reference FASTA file to index

*.{fasta,fa,fna}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

gem (file)

The created index

*.gem

info (file)

The execution log

*.info
mantainer
Github user miqalvarez
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Tools

gem3
GPL v3

The GEM indexer (v3).

github.com/miqalvarez/gem3/tree/gem3-indexer