A derivative of GenomeScope2.0 modified to work with FastK
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fastk_histex_histogram:file
A histogram formatted for GeneScope using the -G parameter from Fastk Histex
*.hist
linear_plot
*_linear_plot.png:file
A GeneScope linear plot in PNG format
*_linear_plot.png
log_plot
*_log_plot.png:file
A GeneScope log plot in PNG format
*_log_plot.png
model
*_model.txt:file
GeneScope model fit summary
*_model.txt
summary
*_summary.txt:file
GeneScope histogram summary
*_summary.txt
transformed_linear_plot
*_transformed_linear_plot.png:file
A GeneScope transformed linear plot in PNG format
*_transformed_linear_plot.png
transformed_log_plot
*_transformed_log_plot.png:file
A GeneScope transformed log plot in PNG format
*_transformed_log_plot.png
kmer_cov
KMERCOV:float
Average kmer coverage value extracted from summary file
[0-9.]+
versions
versions.yml:file
File containing software versions
versions.yml
