Description

create index file for genmap

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fasta (file)

fasta file to index

*.{fasta,fa,fna}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

index (directory)

Genmap index directory

included in
hicar
maintainers
Github user jianhong
Github user nvnieuwk
get in touch
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Tools

genmap
BSD-3-Clause

Ultra-fast computation of genome mappability.

github.com/cpockrandt/genmap 10.1093/bioinformatics/btaa222