modules/genmap_index

create index file for genmap

indexmappabilityfasta

https://github.com/nf-core/modules/[...]/modules/nf-core/genmap/index

Description

create index file for genmap

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`fasta:file`

fasta file to index

*.{fasta,fa,fna}

Output

name:type

description

pattern

`index`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`${prefix}:directory`

Genmap index directory

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

genmap
BSD-3-Clause

Ultra-fast computation of genome mappability.

github.com/cpockrandt/genmap 10.1093/bioinformatics/btaa222

modules/genmap_index

Description

Input

`meta:map`

`fasta:file`

Output

`index`

`meta:map`

`${prefix}:directory`

`versions`

`versions.yml:file`

Tools

genmap
BSD-3-Clause

included in

maintainers

get in touch

modules/genmap_index

Description

Input

meta:map

fasta:file

Output

index

meta:map

${prefix}:directory

versions

versions.yml:file

Tools

genmap BSD-3-Clause

included in

maintainers

get in touch

`meta:map`

`fasta:file`

`index`

`meta:map`

`${prefix}:directory`

`versions`

`versions.yml:file`

genmap
BSD-3-Clause