create mappability files for a genome
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
index{:bash}
:directory
index directory
meta2{:bash}
Groovy Map containing regions information e.g. [ id:‘test’, single_end:false ]
regions{:bash}
:file
optional - a bed file with regions to define the mappability off
*.bed
wig{:bash}
*.wig{:bash}
genmap wig mappability file
*.wig
bedgraph{:bash}
*.bedgraph{:bash}
genmap bedgraph mappability file
*.bedgraph
txt{:bash}
*.txt{:bash}
genmap text mappability file
*.txt
csv{:bash}
*.csv{:bash}
genmap csv mappability file
*.csv
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Ultra-fast computation of genome mappability.
