create mappability files for a genome
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
index:directory
index directory
meta2:map
Groovy Map containing regions information e.g. [ id:‘test’, single_end:false ]
regions:file
optional - a bed file with regions to define the mappability off
*.bed
wig
*.wig:file
genmap wig mappability file
*.wig
bedgraph
*.bedgraph:file
genmap bedgraph mappability file
*.bedgraph
txt
*.txt:file
genmap text mappability file
*.txt
csv
*.csv:file
genmap csv mappability file
*.csv
versions
versions.yml:file
File containing software versions
versions.yml
Ultra-fast computation of genome mappability.
