Description

for annotating regions, frequencies, cadd scores

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

input_vcf

:file

VCF file

*.{vcf}

Output

name:type
description
pattern

vcf

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*_annotate.vcf

:file

Annotated VCF file

*.{vcf}

versions_genmod

${task.process}

:string

Name of the process

genmod

:string

Name of the tool

genmod --version | sed 's/^.*genmod version: //'

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

Name of the process

genmod

:string

Name of the tool

genmod --version | sed 's/^.*genmod version: //'

:eval

The expression to obtain the version of the tool

Tools

genmod
MIT

Annotate genetic inheritance models in variant files