Description

for annotating regions, frequencies, cadd scores

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

input_vcf{:bash}

:file

VCF file

*.{vcf}

Output

name:type
description
pattern

vcf{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*_annotate.vcf{:bash}

:file

Annotated VCF file

*.{vcf}

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

genmod
MIT

Annotate genetic inheritance models in variant files