Description

annotate models of inheritance

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

input_vcf

:file

vcf file

*.{vcf}

fam

:file

PED file with family information

reduced_penetrance

:file

file with gene ids that have reduced penetrance

*.{tsv}

Output

name:type
description
pattern

vcf

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*_models.vcf

:file

Output VCF file

*.{vcf}

versions_genmod

${task.process}

:string

Name of the process

genmod

:string

Name of the tool

genmod --version | sed 's/^.*genmod version: //'

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

Name of the process

genmod

:string

Name of the tool

genmod --version | sed 's/^.*genmod version: //'

:eval

The expression to obtain the version of the tool

Tools

genmod
MIT

Annotate genetic inheritance models in variant files