annotate models of inheritance
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
input_vcf{:bash}
:file
vcf file
*.{vcf}
fam{:bash}
PED file with family information
reduced_penetrance{:bash}
file with gene ids that have reduced penetrance
*.{tsv}
vcf{:bash}
*_models.vcf{:bash}
Output VCF file
versions_genmod{:bash}
${task.process}{:bash}
:string
Name of the process
genmod{:bash}
Name of the tool
genmod --version | sed 's/^.*genmod version: //'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Annotate genetic inheritance models in variant files
