Description

Score the variants of a vcf based on their annotation

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

input_vcf{:bash}

:file

vcf file

*.{vcf}

fam{:bash}

:file

PED file with family information

score_config{:bash}

:file

rank model config file

*.{ini}

Output

name:type
description
pattern

vcf{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*_score.vcf{:bash}

:file

Output VCF file

*.{vcf}

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

genmod
MIT

Annotate genetic inheritance models in variant files