Description

Score the variants of a vcf based on their annotation

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

input_vcf (file)

vcf file

*.{vcf}

family_file (file)

ped file

*.{ped}

score_config (file)

rank model config file

*.{ini}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

vcf (file)

Output VCF file

*.{vcf}

Tools

genmod
MIT

Annotate genetic inheritance models in variant files