Description

Score the variants of a vcf based on their annotation

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

input_vcf:file

vcf file

*.{vcf}

fam:file

file with family information

score_config:file

rank model config file

*.{ini}

Output

name:type
description
pattern

vcf

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*_score.vcf:file

Output VCF file

*.{vcf}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

genmod
MIT

Annotate genetic inheritance models in variant files