modules/genomad_download

Download geNomad databases and related files

metagenomicsgenomaddatabasedownloadphagevirusplasmid

https://github.com/nf-core/modules/[...]/modules/nf-core/genomad/download

Description

Download geNomad databases and related files

Input

No input parameters

Output

name:type

description

pattern

`genomad_db{:bash}`

`genomad_db/{:bash}`
`:directory`

Directory containing downloaded data with directory being named “genomad_db”

genomad_db

`versions{:bash}`

`versions.yml{:bash}`
`:file`

File containing software versions

versions.yml

Tools

genomad
Lawrence Berkeley National Labs BSD variant license

Identification of mobile genetic elements

portal.nersc.gov/genomad https://github.com/apcamargo/genomad/ 10.1101/2023.03.05.531206