Genotype Salmonella Typhi from Mykrobe results
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
json
JSON formatted file of Mykrobe results
*.json
versions
File containing software versions
versions.yml
tsv
A tab-delimited file of predicted genotypes
*.tsv
Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)
