Genotype Salmonella Typhi from Mykrobe results
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
json:file
JSON formatted file of Mykrobe results
*.json
tsv
*.tsv:file
A tab-delimited file of predicted genotypes
*.tsv
versions
versions.yml:file
File containing software versions
versions.yml
Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)
