Genotype Salmonella Typhi from Mykrobe results
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
json{:bash}
:file
JSON formatted file of Mykrobe results
*.json
tsv{:bash}
*.tsv{:bash}
A tab-delimited file of predicted genotypes
*.tsv
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)
