Description

geofetch is a command-line tool that downloads and organizes data and metadata from GEO and SRA

Input

name:type
description
pattern

geo_accession:string

GEO accession ID

Output

name:type
description
pattern

samples

${geo_accession}:file

List of sample files fetched

${geo_accession}/*.CEL.gz

${geo_accession}/*.CEL.gz:file

List of sample files fetched

${geo_accession}/*.CEL.gz

versions

versions.yml:file

File containing software versions

versions.yml

Tools

geofetch
BSD-2-clause

Downloads data and metadata from GEO and SRA and creates standard PEPs.

args_id: $args
http://geofetch.databio.org https://github.com/pepkit/geofetch
maintainer
Github user mribeirodantas
get in touch
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