Description

geofetch is a command-line tool that downloads and organizes data and metadata from GEO and SRA

Input

Name (Type)
Description
Pattern

geo_accession (string)

GEO accession ID

Output

Name (Type)
Description
Pattern

versions (file)

File containing software versions

versions.yml

geo_accession (string)

String with the GEO accession

samples (file)

List of sample files fetched

${geo_accession}/*.CEL.gz
maintainer
Github user mribeirodantas
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Tools

geofetch
BSD-2-clause

Downloads data and metadata from GEO and SRA and creates standard PEPs.

args_id: $args
http://geofetch.databio.org https://github.com/pepkit/geofetch