Description

Retrieves GEO data from the Gene Expression Omnibus (GEO)

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing metadata about the GEO dataset, minimally ‘id’.

querygse (string)

GSE identifier to pass to getGEO()

Output

Name (Type)
Description
Pattern

rds (file)

R object containing GEO data

*.rds

expression (file)

TSV-format expression matrix

*matrix.tsv

annotation (file)

TSV-format annotation file

*annotation.tsv

versions (file)

File containing software versions

versions.yml