Retrieves GEO data from the Gene Expression Omnibus (GEO)
meta:map
Groovy Map containing metadata about the GEO dataset, minimally ‘id’.
querygse:string
GSE identifier to pass to getGEO()
rds
A Groovy map containing sample information
*.rds:file
R object containing GEO data
*.rds
expression
*matrix.tsv:file
TSV-format expression matrix
*matrix.tsv
annotation
*annotation.tsv:file
TSV-format annotation file
*annotation.tsv
versions
versions.yml:file
File containing software versions
versions.yml
Get data from NCBI Gene Expression Omnibus (GEO)
