Retrieves GEO data from the Gene Expression Omnibus (GEO)
meta
:map
Groovy Map containing metadata about the GEO dataset, minimally ‘id’.
querygse
:string
GSE identifier to pass to getGEO()
rds
A Groovy map containing sample information
*.rds
:file
R object containing GEO data
expression
*matrix.tsv
TSV-format expression matrix
annotation
*annotation.tsv
TSV-format annotation file
versions
versions.yml
File containing software versions
The name of the process
Get data from NCBI Gene Expression Omnibus (GEO)
