Retrieves GEO data from the Gene Expression Omnibus (GEO)
meta{:bash}
:map
Groovy Map containing metadata about the GEO dataset, minimally ‘id’.
querygse{:bash}
:string
GSE identifier to pass to getGEO()
rds{:bash}
A Groovy map containing sample information
*.rds{:bash}
:file
R object containing GEO data
*.rds
expression{:bash}
*matrix.tsv{:bash}
TSV-format expression matrix
*matrix.tsv
annotation{:bash}
*annotation.tsv{:bash}
TSV-format annotation file
*annotation.tsv
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Get data from NCBI Gene Expression Omnibus (GEO)
