Description

Downloads databases needed for running getorganelle

Input

name:type
description
pattern

organelle_type:string

Type of database, esp. embplant_pt (embryophyta plant plastome), other_pt (non-embryophyta plant plastome), embplant_mt (plant mitochondrion), embplant_nr (plant nuclear ribosomal RNA), animal_mt (animal mitochondrion), and fungus_mt (fungus mitochondrion), fungus_nr (fungus nuclear ribosomal RNA)

Output

name:type
description
pattern

db

organelle_type:string

Type of database, esp. embplant_pt (embryophyta plant plastome), other_pt (non-embryophyta plant plastome), embplant_mt (plant mitochondrion), embplant_nr (plant nuclear ribosomal RNA), animal_mt (animal mitochondrion), and fungus_mt (fungus mitochondrion), fungus_nr (fungus nuclear ribosomal RNA)

getorganelle:directory

Downloaded database for GetOrganelle

versions

versions.yml:file

File containing software versions

versions.yml

Tools

getorganelle
GPL v3

Get organelle genomes from genome skimming data