Description

Downloads databases needed for running getorganelle

Input

Name (Type)
Description
Pattern

organelle_type (string)

Type of database, esp. embplant_pt (embryophyta plant plastome), other_pt (non-embryophyta plant plastome), embplant_mt (plant mitochondrion), embplant_nr (plant nuclear ribosomal RNA), animal_mt (animal mitochondrion), and fungus_mt (fungus mitochondrion), fungus_nr (fungus nuclear ribosomal RNA)

Output

Name (Type)
Description
Pattern

versions (file)

File containing software versions

versions.yml

organelle_type (string)

Type of database, esp. embplant_pt (embryophyta plant plastome), other_pt (non-embryophyta plant plastome), embplant_mt (plant mitochondrion), embplant_nr (plant nuclear ribosomal RNA), animal_mt (animal mitochondrion), and fungus_mt (fungus mitochondrion), fungus_nr (fungus nuclear ribosomal RNA)

db (directory)

Downloaded database for GetOrganelle

maintainer
Github user erinyoung
get in touch
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Tools

getorganelle
GPL v3

Get organelle genomes from genome skimming data

github.com/Kinggerm/GetOrganelle 10.1186/s13059-020-02154-5