Description

Collapse walk-preserving shared affixes in variation graphs in GFA format

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

gfa (file)

Variation graph in GFA format

*.{gfa}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

gfa (file)

Non-redundant variation graph in GFA 1.0 format

*.{gfa}

affixes (file)

Shared affixes in tab-separated values (TSV) text format

*.{txt}

versions (file)

File containing software versions

versions.yml
included in
pangenome
author
Github user heuermh
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Tools

gfaffix
MIT

GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.

github.com/marschall-lab/GFAffix