Description

Collapse walk-preserving shared affixes in variation graphs in GFA format

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

gfa (file)

Variation graph in GFA format

*.{gfa}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

gfa (file)

Non-redundant variation graph in GFA 1.0 format

*.{gfa}

affixes (file)

Shared affixes in tab-separated values (TSV) text format

*.{txt}

versions (file)

File containing software versions

versions.yml

Tools

gfaffix
MIT

GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.