modules/gfatools_gfa2fa

Converts GFA or rGFA files to FASTA

gfargfafastaassemblygenome graphgenomics

https://github.com/nf-core/modules/[...]/modules/nf-core/gfatools/gfa2fa

Description

Converts GFA or rGFA files to FASTA

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

`gfa:file`

GFA or rGFA file

*.gfa

Output

name:type

description

pattern

`fasta`

`meta:map`

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

`*.fasta.gz:file`

FASTA file

*.fasta

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

gfatools
Unknown

Tools for manipulating sequence graphs in the GFA and rGFA formats

github.com/lh3/gfatools no DOI available

modules/gfatools_gfa2fa

Description

Input

meta:map

gfa:file

Output

fasta

meta:map

*.fasta.gz:file

versions

versions.yml:file

Tools

gfatools Unknown

`meta:map`

`gfa:file`

`fasta`

`meta:map`

`*.fasta.gz:file`

`versions`

`versions.yml:file`

gfatools
Unknown