modules/gfatools_gfa2fa

Converts GFA or rGFA files to FASTA

gfargfafastaassemblygenome graphgenomics

https://github.com/nf-core/modules/[...]/modules/nf-core/gfatools/gfa2fa

Description

Converts GFA or rGFA files to FASTA

Input

name:type

description

pattern

`meta{:bash}`
`:map`

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

`gfa{:bash}`
`:file`

GFA or rGFA file

*.gfa

Output

name:type

description

pattern

`fasta{:bash}`

`meta{:bash}`
`:map`

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

`*.fasta.gz{:bash}`
`:file`

FASTA file

*.fasta

`versions{:bash}`

`versions.yml{:bash}`
`:file`

File containing software versions

versions.yml

Tools

gfatools
Unknown

Tools for manipulating sequence graphs in the GFA and rGFA formats

github.com/lh3/gfatools no DOI available

modules/gfatools_gfa2fa

Description

Input

`meta{:bash}`
`:map`

`gfa{:bash}`
`:file`

Output

`fasta{:bash}`

`meta{:bash}`
`:map`

`*.fasta.gz{:bash}`
`:file`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

Tools

gfatools
Unknown

maintainer

get in touch

modules/gfatools_gfa2fa

Description

Input

meta{:bash}:map

gfa{:bash}:file

Output

fasta{:bash}

meta{:bash}:map

*.fasta.gz{:bash}:file

versions{:bash}

versions.yml{:bash}:file

Tools

gfatools Unknown

maintainer

get in touch

`meta{:bash}`
`:map`

`gfa{:bash}`
`:file`

`fasta{:bash}`

`meta{:bash}`
`:map`

`*.fasta.gz{:bash}`
`:file`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

gfatools
Unknown