Description

Converts GFA or rGFA files to FASTA

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

gfa{:bash}

:file

GFA or rGFA file

*.gfa

Output

name:type
description
pattern

fasta{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

*.fasta.gz{:bash}

:file

FASTA file

*.fasta

versions_gfatools{:bash}

${task.process}{:bash}

:string

The name of the process

gfatools{:bash}

:string

The name of the tool

gfatools version | sed '1!d; s/.* //'{:bash}

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

The name of the process

gfatools{:bash}

:string

The name of the tool

gfatools version | sed '1!d; s/.* //'{:bash}

:eval

The expression to obtain the version of the tool

Tools

gfatools
Unknown

Tools for manipulating sequence graphs in the GFA and rGFA formats

github.com/lh3/gfatools no DOI available
maintainer
Github user mahesh-panchal
get in touch
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