Description

Summary statistics for GFA files

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

gfa (file)

GFA or rGFA file

*.gfa

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

versions (file)

File containing software versions

versions.yml

stats (file)

Summary statistics of the GFA file

*.stats
mantainer
Github user mahesh-panchal
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

gfatools
Unknown

Tools for manipulating sequence graphs in the GFA and rGFA formats

github.com/lh3/gfatools no DOI available