modules/gfatools_stat

Summary statistics for GFA files

summarystatisticsgfargfagraphgenomics

https://github.com/nf-core/modules/[...]/modules/nf-core/gfatools/stat

Description

Summary statistics for GFA files

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

`gfa:file`

GFA or rGFA file

*.gfa

Output

name:type

description

pattern

`stats`

`meta:map`

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

`*.stats:file`

Summary statistics of the GFA file

*.stats

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

gfatools
Unknown

Tools for manipulating sequence graphs in the GFA and rGFA formats

github.com/lh3/gfatools no DOI available

modules/gfatools_stat

Description

Input

meta:map

gfa:file

Output

stats

meta:map

*.stats:file

versions

versions.yml:file

Tools

gfatools Unknown

`meta:map`

`gfa:file`

`stats`

`meta:map`

`*.stats:file`

`versions`

`versions.yml:file`

gfatools
Unknown