modules/gfatools_stat

Summary statistics for GFA files

summarystatisticsgfargfagraphgenomics

https://github.com/nf-core/modules/[...]/modules/nf-core/gfatools/stat

Description

Summary statistics for GFA files

Input

name:type

description

pattern

`meta{:bash}`
`:map`

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

`gfa{:bash}`
`:file`

GFA or rGFA file

*.gfa

Output

name:type

description

pattern

`stats{:bash}`

`meta{:bash}`
`:map`

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

`*.stats{:bash}`
`:file`

Summary statistics of the GFA file

*.stats

`versions{:bash}`

`versions.yml{:bash}`
`:file`

File containing software versions

versions.yml

Tools

gfatools
Unknown

Tools for manipulating sequence graphs in the GFA and rGFA formats

github.com/lh3/gfatools no DOI available

modules/gfatools_stat

Description

Input

`meta{:bash}`
`:map`

`gfa{:bash}`
`:file`

Output

`stats{:bash}`

`meta{:bash}`
`:map`

`*.stats{:bash}`
`:file`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

Tools

gfatools
Unknown

maintainer

get in touch

modules/gfatools_stat

Description

Input

meta{:bash}:map

gfa{:bash}:file

Output

stats{:bash}

meta{:bash}:map

*.stats{:bash}:file

versions{:bash}

versions.yml{:bash}:file

Tools

gfatools Unknown

maintainer

get in touch

`meta{:bash}`
`:map`

`gfa{:bash}`
`:file`

`stats{:bash}`

`meta{:bash}`
`:map`

`*.stats{:bash}`
`:file`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

gfatools
Unknown