Validate, filter, convert and perform various other operations on GFF files
meta:map
Groovy Map containing meta data e.g. [ id:‘test’ ]
gff:file
A reference file in either the GFF3, GFF2 or GTF format.
*.{gff, gtf}
fasta:file
A multi-fasta file with the genomic sequences
*.{fasta,fa,faa,fas,fsa}
gtf
*.gtf:file
GTF file resulting from the conversion of the GFF input file if ‘-T’ argument is present
*.{gtf}
gffread_gff
*.gff3:file
GFF3 file resulting from the conversion of the GFF input file if ‘-T’ argument is absent
*.gff3
gffread_fasta
*.fasta:file
Fasta file produced when either of ‘-w’, ‘-x’, ‘-y’ parameters is present
*.fasta
versions
versions.yml:file
File containing software versions
versions.yml
GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more.
