Tool to create a binary reference panel for quick reading time.
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
reference:file
Reference panel of haplotypes in VCF/BCF format.
*.{vcf.gz,bcf.gz}
reference_index:file
Index file of the Reference panel file.
*.{vcf.gz.csi,bcf.gz.csi}
input_region:string
Target region used for imputation, including left and right buffers (e.g. chr20:1000000-2000000).
chrXX:leftBufferPosition-rightBufferPosition
output_region:string
Target imputed region, excluding left and right buffers (e.g. chr20:1000000-2000000).
meta2:map
Groovy Map containing genomic map information e.g. [ map:'GRCh38' ]
[ map:'GRCh38' ]
map:file
File containing the genetic map.
*.gmap
bin_ref
*.bin:file
binary reference panel
*.bin
versions
versions.yml:file
File containing software versions
versions.yml
GLIMPSE2 is a phasing and imputation method for large-scale low-coverage sequencing studies.
