Defines chunks where to run imputation
Groovy Map containing sample information
e.g. [ id:‘test’, single_end
Target dataset in VCF/BCF format defined at all variable positions.
The file could possibly be without GT field (for efficiency reasons a file containing only the positions is recommended).
Target region, usually a full chromosome (e.g. chr20:1000000-2000000 or chr20).
For chrX, please treat PAR and non-PAR regions as different choromosome in order to avoid mixing ploidy.
File containing software versions
Tab delimited output txt file containing buffer and imputation regions.
GLIMPSE is a phasing and imputation method for large-scale low-coverage sequencing studies.