Generates haplotype calls by sampling haplotype estimates
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
input{:bash}
:file
Imputed VCF/BCF file
*.{vcf,bcf,vcf.gz,bcf.gz}
index{:bash}
Index file of the input VCF/BCF file.
*.{vcf.gz.csi,bcf.gz.csi}
haplo_sampled{:bash}
*.{vcf,bcf,vcf.gz,bcf.gz}{:bash}
Output VCF/BCF file containing phased genotypes.
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
GLIMPSE is a phasing and imputation method for large-scale low-coverage sequencing studies.
