Description

Generates haplotype calls by sampling haplotype estimates

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

input (file)

VCF/BCF file generated using GLIMPSE ligate

*.{vcf,bcf,vcf.gz,bcf.gz}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

haplo_sampled (file)

Output VCF/BCF file containing phased genotypes.

*.{vcf,bcf,vcf.gz,bcf.gz}
maintainer
Github user louislenezet
get in touch
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Tools

glimpse
MIT

GLIMPSE is a phasing and imputation method for large-scale low-coverage sequencing studies.

odelaneau.github.io/GLIMPSE odelaneau.github.io/GLIMPSE/commands https://github.com/odelaneau/GLIMPSE 10.1038/s41588-020-00756-0