Generates haplotype calls by sampling haplotype estimates
meta
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
input
VCF/BCF file generated using GLIMPSE ligate
*.{vcf,bcf,vcf.gz,bcf.gz}
sample
Samples a likely haplotype pair for each sample, use it in combination with --seed. Option not recommended for general usage, use --solve instead
solve
Get the most likely haplotype pair for each sample (the random number generator is not used)
versions
File containing software versions
versions.yml
haplo_sampled
Output VCF/BCF file containing phased genotypes.
GLIMPSE is a phasing and imputation method for large-scale low-coverage sequencing studies.
