Description

Generates haplotype calls by sampling haplotype estimates

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

input:file

VCF/BCF file generated using GLIMPSE ligate

*.{vcf,bcf,vcf.gz,bcf.gz}

Output

name:type
description
pattern

haplo_sampled

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.{vcf,bcf,vcf.gz,bcf.gz}:file

Output VCF/BCF file containing phased genotypes.

*.{vcf,bcf,vcf.gz,bcf.gz}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

glimpse
MIT

GLIMPSE is a phasing and imputation method for large-scale low-coverage sequencing studies.