Generates haplotype calls by sampling haplotype estimates
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
input{:bash}
:file
Imputed VCF/BCF file
*.{vcf,bcf,vcf.gz,bcf.gz}
index{:bash}
Index file of the input VCF/BCF file.
*.{vcf.gz.csi,bcf.gz.csi}
haplo_sampled{:bash}
*.{vcf,bcf,vcf.gz,bcf.gz}{:bash}
Output VCF/BCF file containing phased genotypes.
versions_glimpse{:bash}
${task.process}{:bash}
:string
The name of the process
glimpse{:bash}
The name of the tool
GLIMPSE_sample --help | sed -n '/Version/s/.*: //p'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
GLIMPSE is a phasing and imputation method for large-scale low-coverage sequencing studies.
