merge gVCF files and perform joint variant calling
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
gvcfs
:list
Input genomic vcf files
*.{gvcf,gvcf.gz,g.vcf,g.vcf.gz}
custom_config
:file
Custom YML config for additional profiles
*.{yml,yaml}
meta2
Groovy Map containing regions information e.g. [ id:‘test’ ]
bed
Input BED file
*.bed
bcf
*.bcf
merged BCF file
versions_glnexus
${task.process}
:string
The name of the process
glnexus
The name of the tool
glnexus_cli 2>&1 | grep -oE '[0-9]+\.[0-9]+\.[0-9]+'
:eval
The expression to obtain the version of the tool
versions
scalable gVCF merging and joint variant calling for population sequencing projects.
