merge gVCF files and perform joint variant calling
meta:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
gvcfs:list
Input genomic vcf files
*.{gvcf,gvcf.gz,g.vcf,g.vcf.gz}
custom_config:file
Custom YML config for additional profiles
*.{yml,yaml}
meta2:map
Groovy Map containing regions information e.g. [ id:‘test’ ]
bed:list
Input BED file
*.bed
vcf_output:boolean
Specify to output to VCF format
bcf
*.bcf:file
merged BCF file
*.bcf
vcf
*.vcf.gz:file
merged VCF file
versions
versions.yml:file
File containing software versions
versions.yml
scalable gVCF merging and joint variant calling for population sequencing projects.
