merge gVCF files and perform joint variant calling
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
gvcfs{:bash}
:list
Input genomic vcf files
*.{gvcf,gvcf.gz,g.vcf,g.vcf.gz}
custom_config{:bash}
:file
Custom YML config for additional profiles
*.{yml,yaml}
meta2{:bash}
Groovy Map containing regions information e.g. [ id:‘test’ ]
bed{:bash}
Input BED file
*.bed
bcf{:bash}
*.bcf{:bash}
merged BCF file
*.bcf
versions_glnexus{:bash}
${task.process}{:bash}
:string
The name of the process
glnexus{:bash}
The name of the tool
glnexus_cli 2>&1 | grep -oE '[0-9]+\.[0-9]+\.[0-9]+'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
scalable gVCF merging and joint variant calling for population sequencing projects.
