Description

merge gVCF files and perform joint variant calling

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’ ]

gvcfs (list)

Input genomic vcf files

*.{gvcf,gvcf.gz,g.vcf,g.vcf.gz}

Output

Name (Type)
Description
Pattern

versions (file)

File containing software versions

versions.yml

bcf (file)

merged BCF file

*.bcf

Tools

glnexus
Apache-2.0

scalable gVCF merging and joint variant calling for population sequencing projects.