Description

Query metadata for any taxon across the tree of life.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’]

taxon:string

The taxon to search. An NCBI taxon ID, or the name of a taxon at any rank.

taxa_file:file

A file of NCBI taxonomy ID’s (tips) and/or binomial names. Each line should contain a single entry.File size is limited to 500 entries.

*.txt

Output

name:type
description
pattern

taxonsearch

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.tsv:file

TSV file containing search results.

*.tsv

versions

versions.yml:file

File containing software versions

versions.yml

Tools

goat
MIT

goat-cli is a command line interface to query the Genomes on a Tree Open API.