Description

Query metadata for any taxon across the tree of life.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’]

taxon (string)

The taxon to search. An NCBI taxon ID, or the name of a taxon at any rank.

taxa_file (file)

A file of NCBI taxonomy ID’s (tips) and/or binomial names. Each line
should contain a single entry.File size is limited to 500 entries.

*.txt

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

taxonsearch (file)

TSV file containing search results.

*.tsv

Tools

goat
MIT

goat-cli is a command line interface to query the Genomes on a Tree Open API.