Query metadata for any taxon across the tree of life.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’]
taxon{:bash}
:string
The taxon to search. An NCBI taxon ID, or the name of a taxon at any rank.
taxa_file{:bash}
:file
A file of NCBI taxonomy ID’s (tips) and/or binomial names. Each line should contain a single entry.File size is limited to 500 entries.
*.txt
taxonsearch{:bash}
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
*.tsv{:bash}
TSV file containing search results.
*.tsv
versions_goat{:bash}
${task.process}{:bash}
The name of the process
goat{:bash}
The name of the tool
goat-cli --version | cut -d' ' -f2{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
goat-cli is a command line interface to query the Genomes on a Tree Open API.
