Description

Quickly generate evenly sized (by amount of data) regions across a number of bam/cram files

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

bai{:bash}

:file

BAI/CRAI file

*.{bai,crai}

meta2{:bash}

:map

Groovy Map containing reference information e.g. [ id:‘genome’ ]

fai{:bash}

:file

Reference fasta index file

*.fai

split{:bash}

:boolean

Split the regions

Output

name:type
description
pattern

bed{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.bed{:bash}

:file

Bed file containing split regions

*.bed

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

goleft
MIT

goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary

github.com/brentp/goleft 10.1093/gigascience/gix090
maintainer
Github user matthdsm
get in touch
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