modules/goleft_indexsplit

Quickly generate evenly sized (by amount of data) regions across a number of bam/cram files

bambedcramindexsplit

https://github.com/nf-core/modules/[...]/modules/nf-core/goleft/indexsplit

Description

Quickly generate evenly sized (by amount of data) regions across a number of bam/cram files

Input

name:type

description

pattern

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`bai`
`:file`

BAI/CRAI file

*.{bai,crai}

`meta2`
`:map`

Groovy Map containing reference information e.g. [ id:‘genome’ ]

`fai`
`:file`

Reference fasta index file

*.fai

`split`
`:boolean`

Split the regions

Output

name:type

description

pattern

`bed`

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`*.bed`
`:file`

Bed file containing split regions

*.bed

`versions_goleft`

`${task.process}`
`:string`

The name of the process

`goleft`
`:string`

The name of the tool

`goleft --version 2>&1 | sed '1!d;s/^.*goleft Version: //'`
`:eval`

The expression to obtain the version of the tool

Topics

name:type

description

pattern

`versions`

`${task.process}`
`:string`

The name of the process

`goleft`
`:string`

The name of the tool

`goleft --version 2>&1 | sed '1!d;s/^.*goleft Version: //'`
`:eval`

The expression to obtain the version of the tool

Tools

goleft
MIT

goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary

github.com/brentp/goleft 10.1093/gigascience/gix090

modules/goleft_indexsplit

Description

Input

`meta`
`:map`

`bai`
`:file`

`meta2`
`:map`

`fai`
`:file`

`split`
`:boolean`

Output

`bed`

`meta`
`:map`

`*.bed`
`:file`

`versions_goleft`

`${task.process}`
`:string`

`goleft`
`:string`

`goleft --version 2>&1 | sed '1!d;s/^.*goleft Version: //'`
`:eval`

Topics

`versions`

`${task.process}`
`:string`

`goleft`
`:string`

`goleft --version 2>&1 | sed '1!d;s/^.*goleft Version: //'`
`:eval`

Tools

goleft
MIT

maintainer

get in touch

modules/goleft_indexsplit

Description

Input

meta:map

bai:file

meta2:map

fai:file

split:boolean

Output

bed

meta:map

*.bed:file

versions_goleft

${task.process}:string

goleft:string

goleft --version 2>&1 | sed '1!d;s/^.*goleft Version: //':eval

Topics

versions

${task.process}:string

goleft:string

goleft --version 2>&1 | sed '1!d;s/^.*goleft Version: //':eval

Tools

goleft MIT

maintainer

get in touch

`meta`
`:map`

`bai`
`:file`

`meta2`
`:map`

`fai`
`:file`

`split`
`:boolean`

`bed`

`meta`
`:map`

`*.bed`
`:file`

`versions_goleft`

`${task.process}`
`:string`

`goleft`
`:string`

`goleft --version 2>&1 | sed '1!d;s/^.*goleft Version: //'`
`:eval`

`versions`

`${task.process}`
`:string`

`goleft`
`:string`

`goleft --version 2>&1 | sed '1!d;s/^.*goleft Version: //'`
`:eval`

goleft
MIT