Description

Quickly generate evenly sized (by amount of data) regions across a number of bam/cram files

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bai (file)

BAI/CRAI file

*.{bai,crai}

meta2 (map)

Groovy Map containing reference information
e.g. [ id:‘genome’ ]

fai (file)

Reference fasta index file

*.fai

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bed (file)

Bed file containing split regions

*.bed

versions (file)

File containing software versions

versions.yml

Tools

goleft
MIT

goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary