Description

Checks if the input file is bgzip compressed or not

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

input{:bash}

:file

file to check compression

*.gz

Output

name:type
description
pattern

compress_bgzip{:bash}

meta{:bash}

:string

environmental variable with value “yes” or “no”

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

grabix

a wee tool for random access into BGZF files.