Description

Checks if the input file is bgzip compressed or not

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

input

:file

file to check compression

*.gz

Output

name:type
description
pattern

compress_bgzip

meta

:string

environmental variable with value “yes” or “no”

versions_grabix

${task.process}

:string

The name of the process

grabix

:string

The name of the tool

grabix |& sed -n 's/^version: //p'

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

grabix

:string

The name of the tool

grabix |& sed -n 's/^version: //p'

:eval

The expression to obtain the version of the tool

Tools

grabix

a wee tool for random access into BGZF files.