A versatile pairwise aligner for genomic and spliced nucleotide sequences
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads{:bash}
:file
file containing reads to be aligned.
fasta{:bash}
Reference database in FASTA format.
index{:bash}
FASTA index in gmidx.
sam{:bash}
*.sam{:bash}
Alignment in SAM format
*.sam
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
A versatile pairwise aligner for genomic and spliced nucleotide sequences.
