Description

A versatile pairwise aligner for genomic and spliced nucleotide sequences

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

reads:file

file containing reads to be aligned.

fasta:file

Reference database in FASTA format.

index:file

FASTA index in gmidx.

Output

name:type
description
pattern

sam

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.sam:file

Alignment in SAM format

*.sam

versions

versions.yml:file

File containing software versions

versions.yml

Tools