A versatile pairwise aligner for genomic and spliced nucleotide sequences
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads:file
file containing reads to be aligned.
fasta:file
Reference database in FASTA format.
index:file
FASTA index in gmidx.
sam
*.sam:file
Alignment in SAM format
*.sam
versions
versions.yml:file
File containing software versions
versions.yml
A versatile pairwise aligner for genomic and spliced nucleotide sequences.
