A versatile pairwise aligner for genomic and spliced nucleotide sequences
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads
:file
file containing reads to be aligned.
fasta
Reference database in FASTA format.
index
FASTA index in gmidx.
sam
*.sam
Alignment in SAM format
versions
versions.yml
File containing software versions
A versatile pairwise aligner for genomic and spliced nucleotide sequences.
