A versatile pairwise aligner for genomic and spliced nucleotide sequences
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads
:file
file containing reads to be aligned.
fasta
Reference database in FASTA format.
index
FASTA index in gmidx.
sam
*.sam
Alignment in SAM format
versions_graphmap2
${task.process}
:string
The name of the process
graphmap2
The name of the tool
graphmap2 2>&1 | sed -n 's/Version: v//p'
:eval
The expression to obtain the version of the tool
versions
A versatile pairwise aligner for genomic and spliced nucleotide sequences.
