Description

A versatile pairwise aligner for genomic and spliced nucleotide sequences

Input

name:type
description
pattern

fasta

:file

Reference database in FASTA format.

Output

name:type
description
pattern

index

*.gmidx

:file

Index file in gmidx format

*.gmidx

versions_graphmap2

${task.process}

:string

The name of the process

graphmap2

:string

The name of the tool

graphmap2 2>&1 | sed -n 's/Version: v//p'

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

graphmap2

:string

The name of the tool

graphmap2 2>&1 | sed -n 's/Version: v//p'

:eval

The expression to obtain the version of the tool

Tools