Tools for population-scale genotyping using pangenome graphs.
meta
Groovy Map containing sample information e.g. [ id:‘test’ ]
vcf
VCF files
*.{vcf,vcf.gz}
versions
File containing software versions
versions.yml
Concatenated VCF file
*.{vcf.gz}
tbi
Concatenated VCF file index
*.{tbi}
A graph-based variant caller capable of genotyping population-scale short read data sets while incoperating previously discovered variants.
