Tools for population-scale genotyping using pangenome graphs.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
vcf{:bash}
:file
VCF files
*.{vcf,vcf.gz}
${prefix}.vcf.gz{:bash}
Concatenated VCF file
*.{vcf.gz}
tbi{:bash}
${prefix}.vcf.gz.tbi{:bash}
Concatenated VCF file index
*.{tbi}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
A graph-based variant caller capable of genotyping population-scale short read data sets while incorporating previously discovered variants.
