Tools for population-scale genotyping using pangenome graphs.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
vcf
:file
VCF files
*.{vcf,vcf.gz}
${prefix}.vcf.gz
Concatenated VCF file
*.{vcf.gz}
tbi
${prefix}.vcf.gz.tbi
Concatenated VCF file index
*.{tbi}
versions_graphtyper
${task.process}
:string
The name of the process
graphtyper
The name of the tool
graphtyper --help | tail -1 | sed 's/.* //'
:eval
The expression to obtain the version of the tool
versions
A graph-based variant caller capable of genotyping population-scale short read data sets while incorporating previously discovered variants.
