Tools for population-scale genotyping using pangenome graphs.
meta:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
vcf:file
VCF files
*.{vcf,vcf.gz}
vcf
*.vcf.gz:file
Concatenated VCF file
*.{vcf.gz}
tbi
*.tbi:file
Concatenated VCF file index
*.{tbi}
versions
versions.yml:file
File containing software versions
versions.yml
A graph-based variant caller capable of genotyping population-scale short read data sets while incoperating previously discovered variants.
