modules/gstama_merge
Merge multiple transcriptomes while maintaining source information.
Output
This is the main merged annotation file. Transcripts are coloured according to the source support for each model. Sources are numbered based on the order supplied in the input filelist file. For example the first file named in the filelist file would have its transcripts coloured in red. If a transcript has multiple sources the colour is shown as magenta.
*.bed
This contains a bed12 format file which shows the coordinates of each input transcript matched to the merged transcript ID. I used the “txt” extension even though it is a bed file just to avoid confusion with the main bed file. You can use this file to map the final merged transcript models to their pre-merged supporting transcripts. The 1st subfield in the 4th column shows the final merged transcript ID while the 2nd subfield shows the pre-merged transcript ID with source prefix.
*_merge.txt