Description

Helper script, remove remaining polyA sequences from Full Length Non Chimeric reads (Pacbio isoseq3)

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fasta (file)

Full Length Non Chimeric reads in fasta format

*.{fa,fasta}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

fasta (file)

The Full Length Non Chimeric reads clened from remaining polyA tails. The sequences are in FASTA format compressed with gzip.

*_tama.fa.gz

report (file)

A text file describing the number of polyA tails removed and their length. Compressed with gzip.

*_tama_polya_flnc_report.txt.gz

tails (file)

A gzip compressed FASTA file of trimmed polyA tails.

*_tama_tails.fa.gz
included in
isoseq
maintainer
Github user sguizard
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