Description

GenomeTools gt-gff3 utility to parse, possibly transform, and output GFF3 files

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'test' ]

gff3:file

Input gff3 file

*.{gff,gff3}

Output

name:type
description
pattern

gt_gff3

meta:map

Groovy Map containing sample information e.g. [ id:'test' ]

*.gt.gff3:file

Parsed gff3 file produced only if there is no parsing error

*.gt.gff3

error_log

meta:map

Groovy Map containing sample information e.g. [ id:'test' ]

*.error.log:file

Error log if gt-gff3 failed to parse the input gff3 file

*.error.log

versions

versions.yml:file

File containing software versions

versions.yml