GenomeTools gt-gff3 utility to parse, possibly transform, and output GFF3 files
meta
:map
Groovy Map containing sample information e.g. [ id:'test' ]
[ id:'test' ]
gff3
:file
Input gff3 file
*.{gff,gff3}
gt_gff3
*.gt.gff3
Parsed gff3 file produced only if there is no parsing error
error_log
*.error.log
Error log if gt-gff3 failed to parse the input gff3 file
versions_gt
${task.process}
:string
The name of the process
genometools
The name of the tool
gt --version | sed '1!d;s/.* //'
:eval
The expression to obtain the version of the tool
versions
The GenomeTools genome analysis system
