Predicts LTR retrotransposons using GenomeTools gt-ltrharvest utility
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'sample1' ]
[ id:'sample1' ]
index{:bash}
:directory
Folder containing the suffixerator index files
suffixerator
tabout{:bash}
*.tabout{:bash}
:file
Old tabular output by default or when -tabout yes argument is present
-tabout yes
*.tabout
gff3{:bash}
*.gff3{:bash}
GFF3 output when -tabout no argument is present
-tabout no
*.gff3
fasta{:bash}
$out_name{:bash}
FASTA output when -out argument is present
-out
*.{fa,fsa,fasta}
inner_fasta{:bash}
$outinner_name{:bash}
FASTA output for inner regions when -outinner argument is present
-outinner
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
The GenomeTools genome analysis system
