modules/gt_stat

GenomeTools gt-stat utility to show statistics about features contained in GFF3 files

genomegff3annotationstatisticsstats

https://github.com/nf-core/modules/[...]/modules/nf-core/gt/stat

Description

GenomeTools gt-stat utility to show statistics about features contained in GFF3 files

Input

name:type

description

pattern

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:'test' ]

`gff3`
`:file`

Input gff3 file

*.{gff,gff3}

Output

name:type

description

pattern

`stats`

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:'test' ]

`${prefix}.yml`
`:file`

Stats file in yaml format

*.yml

`versions`

`versions.yml`
`:file`

File containing software versions

versions.yml

Tools

gt
ISC

The GenomeTools genome analysis system

genometools.org genometools.org/documentation https://github.com/genometools/genometools 10.1109/TCBB.2013.68

modules/gt_stat

Description

Input

`meta`
`:map`

`gff3`
`:file`

Output

`stats`

`meta`
`:map`

`${prefix}.yml`
`:file`

`versions`

`versions.yml`
`:file`

Tools

gt
ISC

maintainer

get in touch

modules/gt_stat

Description

Input

meta:map

gff3:file

Output

stats

meta:map

${prefix}.yml:file

versions

versions.yml:file

Tools

gt ISC

maintainer

get in touch

`meta`
`:map`

`gff3`
`:file`

`stats`

`meta`
`:map`

`${prefix}.yml`
`:file`

`versions`

`versions.yml`
`:file`

gt
ISC