Description

GenomeTools gt-stat utility to show statistics about features contained in GFF3 files

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:'test' ]

gff3

:file

Input gff3 file

*.{gff,gff3}

Output

name:type
description
pattern

stats

meta

:map

Groovy Map containing sample information e.g. [ id:'test' ]

${prefix}.yml

:file

Stats file in yaml format

*.yml

versions_gt

${task.process}

:string

The name of the process

genometools

:string

The name of the tool

gt --version | sed '1!d;s/.* //'

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

genometools

:string

The name of the tool

gt --version | sed '1!d;s/.* //'

:eval

The expression to obtain the version of the tool