Description
GTDB-Tk is a software toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes based on the Genome Database Taxonomy GTDB.
Input
Name (Type)
Description
Pattern
Groovy Map containing sample information
e.g. [ id:‘test’, single_end
Output
Name (Type)
Description
Pattern
NJ or UPGMA tree in Newick format produced from a multiple sequence alignment
*.{classify.tree.gz}
A TSV summary file lineage markers used for the classification.
*.{markers_summary.tsv}
Multiple sequence alignments file for the user-provided files.
*.{user_msa.fasta.gz}
A list of genomes with an insufficient number of amino acids in MSA..
*.{filtered.tsv}