Sort GTF files in chr/pos/feature order
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'sample1' ]
[ id:'sample1' ]
gtf{:bash}
:file
Unsorted GTF/GFF file.
*.{gff,gtf}
*.sorted.${gtf.extension}{:bash}
Sorted GTF file
versions_gtfsort{:bash}
${task.process}{:bash}
:string
Name of the process
gtfsort{:bash}
Name of the tool
gtfsort --version |& sed "s/gtfsort //"{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
A chr/pos/feature GTF sorter that uses a lexicographically-based index ordering algorithm.
