modules/gunc_downloaddb

Download database for GUNC detection of Chimerism and Contamination in Prokaryotic Genomes

downloadprokaryoteassemblygenomequality controlchimeras

https://github.com/nf-core/modules/[...]/modules/nf-core/gunc/downloaddb

Description

Download database for GUNC detection of Chimerism and Contamination in Prokaryotic Genomes

Input

name:type

description

pattern

`db_name:string`

Which database to download. Options: progenomes or gtdb

progenomes|gtdb

Output

name:type

description

pattern

`db`

`*.dmnd:file`

GUNC database file

*.dmnd

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

gunc
GNU General Public v3 or later (GPL v3+)

Python package for detection of chimerism and contamination in prokaryotic genomes.

grp-bork.embl-community.io/gunc https://github.com/grp-bork/gunc 10.1186/s13059-021-02393-0

modules/gunc_downloaddb

Description

Input

`db_name:string`

Output

`db`

`*.dmnd:file`

`versions`

`versions.yml:file`

Tools

gunc
GNU General Public v3 or later (GPL v3+)

included in

maintainer

get in touch

modules/gunc_downloaddb

Description

Input

db_name:string

Output

db

*.dmnd:file

versions

versions.yml:file

Tools

gunc GNU General Public v3 or later (GPL v3+)

included in

maintainer

get in touch

`db_name:string`

`db`

`*.dmnd:file`

`versions`

`versions.yml:file`

gunc
GNU General Public v3 or later (GPL v3+)