Description

Download database for GUNC detection of Chimerism and Contamination in Prokaryotic Genomes

Input

name:type
description
pattern

db_name{:bash}

:string

Which database to download. Options: progenomes or gtdb

progenomes|gtdb

Output

name:type
description
pattern

db{:bash}

*.dmnd{:bash}

:file

GUNC database file

*.dmnd

versions_gunc{:bash}

${task.process}{:bash}

:string

The name of the process

gunc{:bash}

:string

The name of the tool

gunc --version{:bash}

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

The name of the process

gunc{:bash}

:string

The name of the tool

gunc --version{:bash}

:eval

The expression to obtain the version of the tool

Tools

gunc
GNU General Public v3 or later (GPL v3+)

Python package for detection of chimerism and contamination in prokaryotic genomes.

grp-bork.embl-community.io/gunc https://github.com/grp-bork/gunc 10.1186/s13059-021-02393-0
included in
mag
maintainer
Github user jfy133
get in touch
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