Merging of CheckM and GUNC results in one summary table
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
gunc_file{:bash}
:file
Path of a gunc_scores.tsv file (mandatory)
*.{bam,cram,sam}
checkm_file{:bash}
Output TSV from CheckM qa (ideally with -o 2 extended format) (mandatory)
tsv{:bash}
*.tsv{:bash}
Merged checkm/gunc results in TSV format
*.tsv
versions_gunc{:bash}
${task.process}{:bash}
:string
The name of the process
gunc{:bash}
The name of the tool
gunc --version{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Python package for detection of chimerism and contamination in prokaryotic genomes.
