Merging of CheckM and GUNC results in one summary table
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
gunc_file:file
Path of a gunc_scores.tsv file (mandatory)
*.{bam,cram,sam}
checkm_file:file
Output TSV from CheckM qa (ideally with -o 2 extended format) (mandatory)
tsv
*.tsv:file
Merged checkm/gunc results in TSV format
*.tsv
versions
versions.yml:file
File containing software versions
versions.yml
Python package for detection of chimerism and contamination in prokaryotic genomes.
