Detection of Chimerism and Contamination in Prokaryotic Genomes
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta_files{:bash}
:file
A list of FASTA files containing contig (bins)
*.fa
db{:bash}
GUNC database file
*.dmnd
maxcss_level_tsv{:bash}
*maxCSS_level.tsv{:bash}
Output file with results for the maximum CSS level
*.tsv
all_levels_tsv{:bash}
*all_levels.tsv{:bash}
Optional output file with results for each taxonomic level
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Python package for detection of chimerism and contamination in prokaryotic genomes.
