Detection of Chimerism and Contamination in Prokaryotic Genomes
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta_files
:file
A list of FASTA files containing contig (bins)
*.fa
db
GUNC database file
*.dmnd
maxcss_level_tsv
*maxCSS_level.tsv
Output file with results for the maximum CSS level
*.tsv
all_levels_tsv
*all_levels.tsv
Optional output file with results for each taxonomic level
versions_gunc
${task.process}
:string
The name of the process
gunc
The name of the tool
gunc --version
:eval
The expression to obtain the version of the tool
versions
Python package for detection of chimerism and contamination in prokaryotic genomes.
