Description

Detection of Chimerism and Contamination in Prokaryotic Genomes

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fasta (file)

FASTA file containing contig (bins)

*.fa

db (file)

GUNC database file

*.dmnd

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

maxcss_levels_tsv (file)

Output file with scores for a taxonomic level with the highest CSS score

*.tsv

all_levels_tsv (file)

Optional output file with results for each taxonomic level

*.tsv
included in
mag
maintainer
Github user jfy133
get in touch
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Tools

gunc
GNU General Public v3 or later (GPL v3+)

Python package for detection of chimerism and contamination in prokaryotic genomes.

grp-bork.embl-community.io/gunc https://github.com/grp-bork/gunc 10.1186/s13059-021-02393-0