Detection of Chimerism and Contamination in Prokaryotic Genomes
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
fasta_files:file
A list of FASTA files containing contig (bins)
*.fa
db:file
GUNC database file
*.dmnd
maxcss_level_tsv
*maxCSS_level.tsv:file
Output file with results for the maximum CSS level
*.tsv
all_levels_tsv
*all_levels.tsv:file
Optional output file with results for each taxonomic level
versions
versions.yml:file
File containing software versions
versions.yml
Python package for detection of chimerism and contamination in prokaryotic genomes.
