Description

Removes all non-variant blocks from a gVCF file to produce a smaller variant-only VCF file.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

gvcf{:bash}

:file

GVCF file

*.{g.vcf,gvcf}.gz

Output

name:type
description
pattern

vcf{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.vcf.gz{:bash}

:file

Converted variant-only VCF file

*.vcf.gz

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

maintainer
Github user nvnieuwk
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