Description

gzrecover is a program that will attempt to extract any readable data out of a gzip file that has been corrupted

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

fastqgz:file

FASTQ.gz files

*.{gz}

Output

name:type
description
pattern

recovered

meta:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

${prefix}*.fastq.gz:file

Recovered FASTQ.gz files

*.{gz}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

gzrt
GPL v2

Unofficial build of the gzip Recovery Toolkit aka gzrecover

urbanophile.com/arenn/hacking/gzrt/gzrt https://github.com/arenn/gzrt no DOI available
included in
fastqrepair
maintainers
Github user mazzalab
Github user tm4zza
get in touch
Ask a question on Slack Open an issue on GitHub